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E-mail: biomed@csu.edu.cn
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Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Histone deacetylases act via the formation of large multiprotein complexes. Deacetylates SP proteins, SP1 and SP3, and regulates their function. Component of the BRG1-RB1-HDAC1 complex, which negatively regulates the CREST-mediated transcription in resting neurons. Upon calcium stimulation, HDAC1 is released from the complex and CREBBP is recruited, which facilitates transcriptional activation. Deacetylates TSHZ3 and regulates its transcriptional repressor activity. Deacetylates 'Lys-310' in RELA and thereby inhibits the transcriptional activity of NF-kappa-B. Deacetylates NR1D2 and abrogates the effect of KAT5-mediated relieving of NR1D2 transcription repression activity. Component of a RCOR/GFI/KDM1A/HDAC complex that suppresses, via histone deacetylase (HDAC) recruitment, a number of genes implicated in multilineage blood cell development. Involved in CIART-mediated transcriptional repression of the circadian transcriptional activator: CLOCK-ARNTL/BMAL1 heterodimer. Required for the transcriptional repression of circadian target genes, such as PER1, mediated by the large PER complex or CRY1 through histone deacetylation.
| Uniprot primary ID | Q13547 |
| PDB ID | 1TYI 4BKX |
| DrugBank ID | DB02546 |
| BioGrid ID | 109315 |
| GuidetoPHARMACOLOGY ID | 2658 |
| PharmGKB ID | PA29226 |
| KEGG ID | hsa:3065 |
| DIP ID | DIP-24184N |
| STRING ID | 9606.ENSP00000362649 |
| IntAct ID | Q13547 |
| DMDM | 2498443 |
| BRENDA | 3.5.1.98 |
| Reactome | R-HSA-201722 R-HSA-1538133 R-HSA-427413 R-HSA-2644606 R-HSA-193670 R-HSA-2122947 R-HSA-3769402 R-HSA-3214815 R-HSA-73762 R-HSA-983231 R-HSA-2894862 R-HSA-2173795 R-HSA-2173796 R-HSA-4641265 |
| SignaLink | |
| BioCyc | |
| Entrez Gene (Gene ID) | 3065 |
| BindingDB | Q13547 |
| Fingerprint type | Sensitivity | SEN_std | Specificity | SPE_std | Accuracy | ACC_std | F1-score | F1-score_std | AUC | AUC_std | MCC | MCC_std | Download model |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| FP2 fingerprints | 0.853 | 0.005 | 0.925 | 0.000 | 0.889 | 0.003 | 0.880 | 0.000 | 0.950 | 0.000 | 0.771 | 0.003 | Download |
| Estate fingerprints | 0.880 | 0.000 | 0.760 | 0.005 | 0.820 | 0.000 | 0.830 | 0.000 | 0.910 | 0.000 | 0.647 | 0.005 | Download |
| MACCS fingerprints | 0.830 | 0.000 | 0.890 | 0.004 | 0.860 | 0.000 | 0.859 | 0.003 | 0.940 | 0.000 | 0.727 | 0.005 | Download |
| Daylight fingerprints | 0.711 | 0.003 | 0.775 | 0.005 | 0.743 | 0.005 | 0.739 | 0.003 | 0.810 | 0.000 | 0.490 | 0.000 | Download |
| ECFP2 fingerprints | 0.970 | 0.000 | 0.930 | 0.005 | 0.950 | 0.000 | 0.950 | 0.000 | 0.990 | 0.000 | 0.902 | 0.004 | Download |
| ECFP4 fingerprints | 0.970 | 0.000 | 0.970 | 0.000 | 0.970 | 0.000 | 0.970 | 0.000 | 0.990 | 0.000 | 0.942 | 0.004 | Download |
| ECFP6 fingerprints | 0.940 | 0.000 | 0.980 | 0.004 | 0.960 | 0.000 | 0.960 | 0.000 | 0.990 | 0.000 | 0.929 | 0.003 | Download |
| Positive dataset | Negative dataset |
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E-mail: biomed@csu.edu.cn
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