Target name

P06493: Cyclin-dependent kinase 1

  Protein function

Plays a key role in the control of the eukaryotic cell cycle by modulating the centrosome cycle as well as mitotic onset; promotes G2-M transition, and regulates G1 progress and G1-S transition via association with multiple interphase cyclins. Required in higher cells for entry into S-phase and mitosis. Phosphorylates PARVA/actopaxin, APC, AMPH, APC, BARD1, Bcl-xL/BCL2L1, BRCA2, CALD1, CASP8, CDC7, CDC20, CDC25A, CDC25C, CC2D1A, CSNK2 proteins/CKII, FZR1/CDH1, CDK7, CEBPB, CHAMP1, DMD/dystrophin, EEF1 proteins/EF-1, EZH2, KIF11/EG5, EGFR, FANCG, FOS, GFAP, GOLGA2/GM130, GRASP1, UBE2A/hHR6A, HIST1H1 proteins/histone H1, HMGA1, HIVEP3/KRC, LMNA, LMNB, LMNC, LBR, LATS1, MAP1B, MAP4, MARCKS, MCM2, MCM4, MKLP1, MYB, NEFH, NFIC, NPC/nuclear pore complex, PITPNM1/NIR2, NPM1, NCL, NUCKS1, NPM1/numatrin, ORC1, PRKAR2A, EEF1E1/p18, EIF3F/p47, p53/TP53, NONO/p54NRB, PAPOLA, PLEC/plectin, RB1, UL40/R2, RAB4A, RAP1GAP, RCC1, RPS6KB1/S6K1, KHDRBS1/SAM68, ESPL1, SKI, BIRC5/survivin, STIP1, TEX14, beta-tubulins, MAPT/TAU, NEDD1, VIM/vimentin, TK1, FOXO1, RUNX1/AML1, SIRT2 and RUNX2. CDK1/CDC2-cyclin-B controls pronuclear union in interphase fertilized eggs. Essential for early stages of embryonic development. During G2 and early mitosis, CDC25A/B/C-mediated dephosphorylation activates CDK1/cyclin complexes which phosphorylate several substrates that trigger at least centrosome separation, Golgi dynamics, nuclear envelope breakdown and chromosome condensation. Once chromosomes are condensed and aligned at the metaphase plate, CDK1 activity is switched off by WEE1- and PKMYT1-mediated phosphorylation to allow sister chromatid separation, chromosome decondensation, reformation of the nuclear envelope and cytokinesis. Inactivated by PKR/EIF2AK2- and WEE1-mediated phosphorylation upon DNA damage to stop cell cycle and genome replication at the G2 checkpoint thus facilitating DNA repair. Reactivated after successful DNA repair through WIP1-dependent signaling leading to CDC25A/B/C-mediated dephosphorylation and restoring cell cycle progression. In proliferating cells, CDK1-mediated FOXO1 phosphorylation at the G2-M phase represses FOXO1 interaction with 14-3-3 proteins and thereby promotes FOXO1 nuclear accumulation and transcription factor activity, leading to cell death of postmitotic neurons. The phosphorylation of beta-tubulins regulates microtubule dynamics during mitosis. NEDD1 phosphorylation promotes PLK1-mediated NEDD1 phosphorylation and subsequent targeting of the gamma-tubulin ring complex (gTuRC) to the centrosome, an important step for spindle formation. In addition, CC2D1A phosphorylation regulates CC2D1A spindle pole localization and association with SCC1/RAD21 and centriole cohesion during mitosis. The phosphorylation of Bcl-xL/BCL2L1 after prolongated G2 arrest upon DNA damage triggers apoptosis. In contrast, CASP8 phosphorylation during mitosis prevents its activation by proteolysis and subsequent apoptosis. This phosphorylation occurs in cancer cell lines, as well as in primary breast tissues and lymphocytes. EZH2 phosphorylation promotes H3K27me3 maintenance and epigenetic gene silencing. CALD1 phosphorylation promotes Schwann cell migration during peripheral nerve regeneration.

  Database links

Uniprot primary ID P06493
PDB ID 4Y72 4YC6 1LC9
DrugBank ID
BioGrid ID 107420
PharmGKB ID PA99
STRING ID 9606.ENSP00000378699
IntAct ID P06493
DMDM 334302921
Reactome R-HSA-380270 R-HSA-69478 R-HSA-170145 R-HSA-2500257 R-HSA-2465910 R-HSA-176417 R- R-HSA-5687128 R-HSA-2514853 R-HSA-157881 R-HSA-176412 R-HSA-5620912 R-HSA-174184 R-HSA-3301854 R-HSA-380259 R-HSA-69273 R-HSA-176408 R-HSA-113507 R-HSA-1538133 R-HSA-2299718
SignaLink P06493
Entrez Gene (Gene ID) 983
BindingDB P06493

  Model Performance Metrics

Fingerprint type Sensitivity SEN_std Specificity SPE_std Accuracy ACC_std F1-score F1-score_std AUC AUC_std MCC MCC_std Download model
FP2 fingerprints 0.869 0.003 0.857 0.004 0.863 0.005 0.863 0.005 0.930 0.000 0.731 0.003 Download
Estate fingerprints 0.717 0.007 0.725 0.005 0.721 0.003 0.720 0.000 0.809 0.003 0.442 0.004 Download
MACCS fingerprints 0.820 0.000 0.790 0.004 0.805 0.005 0.810 0.000 0.880 0.000 0.613 0.005 Download
Daylight fingerprints 0.888 0.004 0.746 0.004 0.817 0.005 0.830 0.000 0.874 0.005 0.640 0.000 Download
ECFP2 fingerprints 0.940 0.000 0.880 0.000 0.910 0.000 0.913 0.005 0.970 0.000 0.826 0.005 Download
ECFP4 fingerprints 0.940 0.000 0.954 0.000 0.947 0.005 0.947 0.005 0.980 0.000 0.891 0.003 Download
ECFP6 fingerprints 0.915 0.007 0.975 0.003 0.945 0.005 0.942 0.004 0.980 0.000 0.890 0.005 Download

  Download datasets

Positive dataset Negative dataset

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